Related computational tools

PeptideCutter is a general protease-substrate cleavage sites prediction tool found at Expasy. It uses consensus motif-based algorithms for the prediction of substrates belonging to a large variety of proteases.

PEPS Software is a tool for the prediction of caspase caspase cleavage sites. It is based on the consensus motifs for caspase substrates. Software can be obtained upon request from author (Garay-Malpartida et al.)

CasPredictor is a software tool for the prediction of caspase cleavage sites which utilizes position-specific scoring matrices together with indices based on neighboring PEST sequences. Software can be obtained upon request from author (Garay-Malpartida et al.)

GraBCas is a web server for cleavage sites prediction of caspase and Granzyme B substrates. It employs the use of position-specific scoring matrices for individual caspases as well as Granzyme B.

The Apoptosis Database by JC Reed's laboratory is a comprehensive compilation of proteins involved in the signaling pathways of apoptosis.

The Apoptosis Gene Information System (AGIS) is a database containing over 2400 genes involved directly or indirectly, in apoptotic pathways of more than 350 different organisms.